2c93655796
- Added auto-resume mechanism with state tracking to automatically resume pending experiment runs and prevent duplicate resumptions. - Added contract path validation to reject unsafe path specifications with absolute paths and parent directory traversal attempts. - Added secondary metrics input to autoresearch setup flow for specifying tradeoff metrics alongside primary objectives. - Enhanced command parsing with shell operator detection to reject piped, redirected, or chained autoresearch.sh commands. - Added prototype pollution guards in object cloning functions to prevent injection via __proto__, constructor, and prototype keys. - Fixed boundary duplication warnings in hashline detection to properly report multiple overlapping hashline references.