- Always augment context files with additional root context, even when
createAgentSession passes preloaded contextFiles (system-prompt.ts)
- Merge configured dirs with existing restored roots on resume instead
of replacing them (sdk.ts)
- Copy additionalDirectories from source header in forkFrom so forks
preserve the multi-root set (session-manager.ts)
- Add test for forkFrom preserving additionalDirectories
Co-authored-by: oh-my-pi <https://omp.sh>