- Added multi-cell Python execution with sequential processing in persistent kernel.
- Changed Python tool API to use cells array instead of single code parameter.
- Renamed workdir parameter to cwd across Bash and Python tools for consistency.
- Fixed indentation adjustment logic for mixed indentation levels in patch tool.
- Removed voice control and TTS features from coding-agent package.
- Removed git tool integration and worktree management from coding-agent.
- Deleted entire git-tool package and all git operations.
- Inlined OpenAI Codex prompt utilities and removed provider exports.
- Converted all tool implementations from factory functions to class-based architecture.
- Updated SDK exports to expose tool classes instead of create*Tool factory functions.
- Refactored tool instantiation patterns across all built-in tools and test files.
- Added proper TypeScript typing with AgentToolResult and AgentToolUpdateCallback interfaces.
- Moved test files from src/core to test/core directory.
- Moved test files from src/core/tools to test/tools directory.
- Moved test files from src/discovery to test/discovery directory.
- Updated import paths to reflect new test file locations.
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