- Simplified Python gateway coordination by removing reference counting and idle timeout functionality.
- Updated Python kernel initialization to support environment variable setup and working directory configuration.
- Modified interactive status display to show Python and venv paths instead of client counts.
- Updated system prompt to clarify CHECKPOINT step 0 timing after user request completion.
- Moved test files from src/core to test/core directory.
- Moved test files from src/core/tools to test/tools directory.
- Moved test files from src/discovery to test/discovery directory.
- Updated import paths to reflect new test file locations.