- Added `toExtensionId()` method to all capability types for granular extension identification and disabling.
- Added `disabledExtensions` and `includeDisabled` options to LoadOptions for filtering disabled capabilities by extension ID.
- Added plugin manifest support for `extensions` entry points with automatic discovery from installed plugins.
- Fixed skill loading to properly respect disabled skill names from custom directories.
- Improved cross-platform path handling by using `path.basename()` instead of string splitting in context file and state manager.
- Refactored capability index loading to validate source metadata and filter disabled extensions before processing.
- Removed Prettier configuration files (.prettierignore and .prettierrc) and migrated formatting to Biome.
- Updated Biome configuration from version 2.3.11 to 2.3.12 and changed arrowParentheses rule from 'always' to 'asNeeded'.
- Pinned @biomejs/biome dependency to exact version 2.3.12 in package.json and bun.lock.
- Applied consistent arrow function formatting across 489 files by removing unnecessary parentheses around single parameters.
- Removed blank lines after comment blocks and reorganized imports for consistency across the codebase.
- Added unified capability-based discovery system for loading configuration from 8 AI coding tools (Cursor, Windsurf, Cline, GitHub Copilot, Gemini, Codex, Claude, VS Code).
- Added Discovery settings tab in interactive mode for enabling/disabling configuration providers.
- Added provider source attribution showing which tool contributed each configuration item.
- Added support for tool-specific rule formats including Cursor MDC, Windsurf global_rules, and Cline .clinerules.
- Changed MCP tool name parsing to use last underscore separator for improved server name handling.
- Refactored core loaders (skills, hooks, custom tools, slash commands) to use capability API instead of manual directory scanning.
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