parseFileDiffs split the captured `git diff --cached --binary` on
"
diff --git ", consuming the newline that terminates each file block, and
patch.join ended with `.replace(/\n+$/, "")`. Both dropped the blank line
that terminates a `GIT binary patch` block, so rebuilding a split-commit
patch produced a corrupt binary patch rejected by `git apply --binary`.
Split on a line-start lookahead so blocks keep their terminators verbatim,
and concatenate join parts without stripping trailing newlines. Both
trailing and mid-diff binary blocks now round-trip byte-exact.
Fixes#8899
- Extracted git operations from ControlledGit class into centralized utils/git module with 1276 lines of typed command wrappers.
- Replaced dependency injection of ControlledGit instances with direct cwd string parameters across commit agent tools and workflows.
- Migrated all git command execution from inline shell calls and custom helpers to structured git module API (diff, status, branch, worktree, patch, etc.).
- Removed ControlledGit class, operations.ts, and helper functions (findGitHeadPath, mergeStdoutStderr, joinPatch) now provided by git module.
- Exported git utilities from main package entry point for extension and plugin use.
roboomp