Fix all Windows-specific test failures caused by path handling problems
and EBUSY errors from unclosed SQLite database handles.
Root causes fixed:
1. POSIX path assumptions: replaced hard-coded file:///tmp, /repo, etc.
with pathToFileURL/path.resolve/path.join computed expectations
2. shortenPath() now normalizes backslashes to forward slashes after ~
and respects home directory boundaries
3. HistoryStorage.resetInstance() leaked its Database — added #close()
that finalizes all prepared statements and closes the DB
4. AgentStorage gained the same resetInstance()/#close() pattern
5. SqliteAuthCredentialStore.close() leaked one-off prepared statements
from inline this.#db.prepare() calls — wrapped each in try/finally
6. model-cache.ts used a process-global DB even for custom dbPath —
now opens/closes per-call via withModelCacheDb
7. createAgentSession leaked AuthStorage on construction failure —
added ownsAuthStorage cleanup in catch block
8. MnemopiBackend.removeDbFiles() now truly best-effort (catches errors)
9. TempDir retry window expanded from 4x10ms to 40x25ms
10. TempDir prefix convention: non-@ prefixes created dirs relative to
cwd instead of os.tmpdir() — all test temp dirs now use @ prefix
11. Shell-escaped interpolated paths in bash tool tests
12. git core.autocrlf false in autoresearch test repo init
All 522 previously-failing Windows tests now pass.
- Replaced file-backed autoresearch contracts with sqlite-backed session/run storage in `~/.omp/autoresearch`.
- Added `AutoresearchStorage` and rewired `init_experiment`, `run_experiment`, and `log_experiment` to persist sessions and runs.
- Added `update_notes` tool with `body`/`append_idea` inputs and updated prompts to use active-session context.
- Removed `autoresearch.md` contract parsing and checks flow, including `runChecks`, `force`, and timeout schema options.
- Updated autoresearch state/types to persist `goal`, `notes`, `branch`, and `baselineCommit` plus run justification/flag metadata.
- Defined ASI as an object with explicit `hypothesis`, `rollback_reason`, and `next_action_hint` fields while allowing additional keys.
- Updated `validateAsiRequirements` to clarify guidance when ASI data is missing or missing a valid hypothesis.
- Adjusted autoresearch state tests to assert the revised ASI validation error messages.
- Standardized missing-file read errors and now return `File not found: <path>` for absent edit targets.
- Centralized AI provider, usage, and OAuth helpers into shared modules to remove duplicated logic.
- Migrated OAuth/API-key login flows to shared factory helpers and removed inline prompt/token-exchange code.
- Reused shared tools and formatter utilities for discovery, stream tails, LSP batching, and source formatting.
- Consolidated repeated test helpers and fixtures into shared modules, replacing inline helper duplicates.
- Fixed PR checkout tool to resolve worktree paths to canonical form using fs.realpath().
- Refactored test mocks to use vi.spyOn for git module functions instead of inline implementations.
- Updated test setup to pass Settings.isolated() with edit.manageImports enabled to EditTool.
- Added afterEach hooks across test suites to restore mocks after each test execution.
- Added contract system for validating benchmark commands, metrics, scope paths, constraints, and off-limits paths.
- Contract validation enforces matching initialization parameters against autoresearch.md before init_experiment.
- Segment fingerprinting detects configuration drift and warns when metrics are not directly comparable.
- Added pending run detection and recovery to resume incomplete experiments from .autoresearch/runs/.
- Run directories organize artifacts with benchmark logs and optional checks logs for traceability.
- Extended experiment state to track run number, command, scope, off-limits, constraints, and fingerprint.
- Added git branch isolation for autoresearch sessions with automatic branch creation, reuse, and worktree safety checks.
- Added scope definition sections (Files in Scope, Off Limits, Constraints) to autoresearch template for explicit session boundaries.
- Added keybinding matcher utilities for consistent escape/cancel key handling across interactive components.
- Added ASI metadata validation (hypothesis and rollback context) in log_experiment tool for experiment tracking.
- Refactored keybinding logic across 13 components to use centralized matcher functions instead of inline key checks.
- Added `defaultInactive` property to ToolDefinition for conditional tool registration and activation control.
- Added dynamic tool activation/deactivation API `setActiveTools()` for managing experiment tools in autoresearch mode.
- Replaced single `command-start.md` workflow with separate `command-initialize.md` and `command-resume.md` prompts for autoresearch initialization and session resumption.
- Added interactive intent dialog for autoresearch optimization goals with automatic session resumption detection based on autoresearch.md presence.
- Refactored autoresearch command handler to distinguish resume vs initialize flows and dynamically activate/deactivate experiment tools based on mode and session state.
- Added autoresearch extension with autonomous experiment loop supporting init, run, and log experiment tools for metric-driven optimization.
- Added widget placement system enabling extensions to position UI components above or below the editor via ExtensionWidgetOptions.
- Added dashboard controller with interactive overlay for viewing experiment results, metrics, and progress with keyboard navigation.
- Removed auto-correction logic for off-by-one range edits in hashline editor to preserve user intent in patch operations.
- Added state reconstruction utilities to parse autoresearch.jsonl logs and rebuild experiment state across sessions.
- Added comprehensive type definitions and helper utilities for metric parsing, ASI validation, and process management.
oldschoola