runSplitCommit reset the index and then re-staged each split via
git.stage.hunks, but stage.hunks builds its file map from the current
diff. After the reset, newly created files were untracked again and
absent from that map, throwing "No diff found for <path>" mid-split.
Preserve the original staged diff so new files remain locatable
through every split iteration.
Fixes#966
POSIX permits short syscalls (incl. open/read/stat) to be interrupted
by a signal and surface as EINTR. Optional sync git metadata helpers
(used by the status line) propagated the raw error and crashed the
agent. Add a small bounded retry around the sync stat/read calls and
classify persistent EINTR as 'metadata unavailable' so optional reads
fall back to undefined instead of throwing.
Fixes#899
- Added a `reset` helper in git utilities to execute `git reset` with optional flags.
- Added support for `hard`, `mixed`, and `soft` mode options, an optional target revision, and signal forwarding to `runEffect`.
- Added support for batch PR operations by accepting `pr` as string or array and dropping `worktree` input.
- Updated `pr_view` and `pr_diff` to normalize PR IDs, process multiple PRs in parallel, and emit combined summaries.
- Refactored checkout into `checkoutPullRequest`, added repo-locking, fixed worktree paths, and summary metadata outputs.
- Updated `remote.add` handling with URL-aware idempotency and per-repo queueing for serialized git mutations.
- Added temp-home test scaffolding and expanded tests for batched PR flows and remote add conflict/no-op cases.
- Extended optional git metadata checks to treat ENFILE and EMFILE like missing paths.
- Updated sync and async helper functions to return null for those filesystem errors instead of throwing.
- Documented the status-line branch-rendering fallback for ENFILE/EMFILE failures in the changelog.
- Updated todo start handling to set the requested task to in_progress while demoting all other in_progress tasks to pending.
- Added task note rendering in summary output by prefixing each note line with "Note:".
- Set GIT_OPTIONAL_LOCKS to 0 in git execution options and added tests for out-of-order start jumps and note summaries.
- Added SHORT_LIVED_GIT_CONFIG constants and withShortLivedGitConfig helper for short-lived overrides.
- Updated runCommand to route git args through short-lived config normalization and avoid duplicate -c entries.
- Added scripts/release git() helper and replaced raw release git invocations with config-safe calls.
- Added git-process-config tests asserting status and stage spawn git with disabled core.fsmonitor/untrackedCache.
- Replaced all Bun.which() calls with $which() utility from @oh-my-pi/pi-utils across 22 files.
- Removed findBashOnPath() wrapper function from procmgr.ts, consolidating binary path resolution.
- Updated AGENTS.md documentation to reflect new $which() API usage pattern.
- Centralized binary detection logic through shared utility, reducing code duplication.
- Fixed memory leak by cancelling idle compaction timer on event controller disposal.
- Fixed session resumption to preserve last non-empty session when starting fresh.
- Fixed stash detection to use git ref resolution instead of output parsing for reliability.
- Fixed secret obfuscation to deobfuscate restored session messages locally while keeping LLM messages obfuscated.
- Fixed stash pop operation to preserve staged changes with --index flag after task branch merges.
- Changed idle compaction settings from enum to numeric type for flexible configuration.
- Migrated GitHub CLI utilities from gh-cli.ts module to utils/git.ts github namespace.
- Consolidated GitHub CLI command execution (available, run, json, text) into git.github namespace with unified error handling.
- Removed gh-cli.ts module and ControlledGit class infrastructure; updated all tool imports and call sites.
- Exported git utilities from main package entry point for extension use.
- Extracted git operations from ControlledGit class into centralized utils/git module with 1276 lines of typed command wrappers.
- Replaced dependency injection of ControlledGit instances with direct cwd string parameters across commit agent tools and workflows.
- Migrated all git command execution from inline shell calls and custom helpers to structured git module API (diff, status, branch, worktree, patch, etc.).
- Removed ControlledGit class, operations.ts, and helper functions (findGitHeadPath, mergeStdoutStderr, joinPatch) now provided by git module.
- Exported git utilities from main package entry point for extension and plugin use.
can1357