- Replaced all Bun.which() calls with $which() utility from @oh-my-pi/pi-utils across 22 files.
- Removed findBashOnPath() wrapper function from procmgr.ts, consolidating binary path resolution.
- Updated AGENTS.md documentation to reflect new $which() API usage pattern.
- Centralized binary detection logic through shared utility, reducing code duplication.
- Migrated all environment variable access from Node.js `process.env` to Bun runtime `Bun.env` API across the entire codebase.
- Updated 71 files including source code, tests, documentation, and configuration to use Bun's native environment variable API.
- Added comprehensive environment variables documentation in `packages/coding-agent/docs/environment-variables.md` covering 100+ environment variables organized by category.
- Updated CHANGELOG entries to reflect migration from `process.env` to `Bun.env` and environment variable prefix changes (PI_* vs OMP_*).
- Maintained identical behavior and logic across all changes - only the environment variable access method was updated.
- Migrated environment variable access from function-based `getEnv()` API to object property-based `$env` API across 43 files in the monorepo.
- Simplified `packages/utils/src/env.ts` by removing scoped environment variable logic (EnvScope, getEnvMap, getEnv functions) and replacing with direct `process.env` reference exported as `$env`.
- Updated `packages/ai/src/stream.ts` to remove environment parameter from KeyResolver functions and use global `$env` object instead of passed-in env parameter.
- Migrated environment variable access from direct process.env to centralized getEnv() utility function across all packages.
- Renamed environment variable prefix from OMP_ to PI_ throughout codebase (e.g., OMP_CODING_AGENT_DIR -> PI_CODING_AGENT_DIR).
- Removed automatic environment variable migration from PI_ to OMP_ prefixes via migrate-env.ts module.
- Removed env setting from configuration schema and applyEnvironmentVariables() method from settings.
- Updated CI/CD build configuration to use PI_COMPILED flag instead of OMP_COMPILED.
- Changed venvPath property in PythonRuntime from nullable (string | null) to optional (string | undefined).
- Added session-based shell execution with persistent shell instances and session management via sessionKey parameter.
- Added support for shell snapshots to initialize bash sessions with saved state via snapshotPath parameter.
- Added sessionEnv option to set environment variables once per session, separate from command-specific env variables.
- Added process group management functions (process_group_id and kill_process_group) for better process lifecycle control on Linux, macOS, and Windows.
- Changed env option to apply variables for the current command only, with session-level variables now managed via sessionEnv.
- Refactored shell execution to use async output queuing with enqueueChunk for proper chunk sequencing and improved timeout handling with process group termination.
- Added native process tree killing and listing functions via new `ps` module in pi-natives crate with platform-specific implementations (Linux /proc, macOS libproc, Windows CreateToolhelp32Snapshot).
- Refactored process termination logic to prioritize native process tree killing when available, improving reliability of process cleanup across platforms.
- Removed detached process spawning across codebase (bash-executor, shell-session, kernel, lsp client, markitdown conversion) in favor of native process tree management.
- Simplified ptree module by removing managed children tracking and postmortem cleanup hooks, delegating process lifecycle management to native implementations.
- Replaced SettingsManager class with new Settings singleton providing synchronous get/set API and background persistence.
- Introduced settings-schema.ts as single source of truth for all configuration definitions with 100+ settings organized into logical groups.
- Migrated from method-based settings access (getTheme(), setTheme()) to path-based access using dot notation (settings.get('theme'), settings.set('theme', value)).
- Removed 2035-line settings-manager.ts file and replaced with modular settings.ts (693 lines) and settings-schema.ts (836 lines) for improved maintainability.
- Unified settings schema into single source of truth eliminating duplicate definitions across settings-defs.ts and settings-manager.ts.
- Added persistent shell session support for bash tool with environment variable preservation across commands.
- Added shellForceBasic setting to force bash/sh even if user's default shell is different (default: true).
- Added OMP_SHELL_PERSIST environment variable to control persistent shell behavior (set to 0 to disable).
- Restructured system prompt with coordinator-specific guidance for parallel task delegation.
- Extracted process management utilities from coding-agent shell module into dedicated procmgr module in utils package.
- Migrated shell configuration retrieval to SettingsManager class with new getGlobalShellConfig() static method.
- Replaced custom killProcessTree() implementation with new terminate() function supporting graceful shutdown with timeout and AbortSignal.
- Updated ptree.ChildProcess to use generic type parameter for input stream masking and delegated process termination to procmgr.terminate().
- Centralized process management across coding-agent modules to use SettingsManager and procmgr utilities instead of standalone shell functions.
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