- Migrated all environment variable access from Node.js `process.env` to Bun runtime `Bun.env` API across the entire codebase.
- Updated 71 files including source code, tests, documentation, and configuration to use Bun's native environment variable API.
- Added comprehensive environment variables documentation in `packages/coding-agent/docs/environment-variables.md` covering 100+ environment variables organized by category.
- Updated CHANGELOG entries to reflect migration from `process.env` to `Bun.env` and environment variable prefix changes (PI_* vs OMP_*).
- Maintained identical behavior and logic across all changes - only the environment variable access method was updated.
- Migrated environment variable access from direct process.env to centralized getEnv() utility function across all packages.
- Renamed environment variable prefix from OMP_ to PI_ throughout codebase (e.g., OMP_CODING_AGENT_DIR -> PI_CODING_AGENT_DIR).
- Removed automatic environment variable migration from PI_ to OMP_ prefixes via migrate-env.ts module.
- Removed env setting from configuration schema and applyEnvironmentVariables() method from settings.
- Updated CI/CD build configuration to use PI_COMPILED flag instead of OMP_COMPILED.
- Changed venvPath property in PythonRuntime from nullable (string | null) to optional (string | undefined).
- Replaced SettingsManager class with new Settings singleton providing synchronous get/set API and background persistence.
- Introduced settings-schema.ts as single source of truth for all configuration definitions with 100+ settings organized into logical groups.
- Migrated from method-based settings access (getTheme(), setTheme()) to path-based access using dot notation (settings.get('theme'), settings.set('theme', value)).
- Removed 2035-line settings-manager.ts file and replaced with modular settings.ts (693 lines) and settings-schema.ts (836 lines) for improved maintainability.
- Unified settings schema into single source of truth eliminating duplicate definitions across settings-defs.ts and settings-manager.ts.
- Plan mode provides structured workflow where agents propose plans for user approval before execution.
- Added plan:// internal URL protocol for accessing plan files and injecting plan-mode context into subagent prompts.
- Added plan mode toggle shortcut and paused status indicator in status line.
- Fixed plan reference injection to properly pass workflow state to plan-mode system prompts.
- Improved autocomplete fuzzy matching to support subsequence matching for skill suggestions.
- Removed Prettier configuration files (.prettierignore and .prettierrc) and migrated formatting to Biome.
- Updated Biome configuration from version 2.3.11 to 2.3.12 and changed arrowParentheses rule from 'always' to 'asNeeded'.
- Pinned @biomejs/biome dependency to exact version 2.3.12 in package.json and bun.lock.
- Applied consistent arrow function formatting across 489 files by removing unnecessary parentheses around single parameters.
- Removed blank lines after comment blocks and reorganized imports for consistency across the codebase.
- Added tsconfig.publish.json files to all packages with optimized publish-time configuration.
- Updated all package.json scripts with prepublishOnly hooks for correct type checking during publish.
- Added @oh-my-pi/omp-stats path mappings to root tsconfig.json for consistent imports.
- Added WASM generation script for photon module and integrated into install:dev script.
- converted relative imports to path aliases ($c/*, $ai/*, $tui/*, etc.) across all packages
- added per-package tsconfig.json with complete path mappings for runtime resolution
- set importModuleSpecifier to non-relative for IDE auto-import preferences
- updated dev script to run from monorepo root for consistent path resolution
- Removed voice control and TTS features from coding-agent package.
- Removed git tool integration and worktree management from coding-agent.
- Deleted entire git-tool package and all git operations.
- Inlined OpenAI Codex prompt utilities and removed provider exports.
- Moved test files from src/core to test/core directory.
- Moved test files from src/core/tools to test/tools directory.
- Moved test files from src/discovery to test/discovery directory.
- Updated import paths to reflect new test file locations.
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