chore(scripts): updated tooling scripts and benchmark workflow configuration

- Enabled Biome VCS settings and expanded fix scripts with new `fix:all` and `fix:tools:all` commands.
- Updated `fix:ts` and `fix:tools` to separate changed-only checks from full-run formatting and generation tasks.
- Simplified edit-benchmark variant parsing by removing hardcoded validation logic, and removed deprecated flags from `run-rs-task.ts`.

scripts/edit-benchmark.py

@@ -17,10 +17,6 @@ import sys
 
 from edit_benchmark_common import BenchmarkSpec, EDIT_DIFF, EXPECTED_CONTENT, run_benchmark_main
 
-# Variants recognised by packages/coding-agent/src/utils/edit-mode.ts.
-VALID_VARIANTS = ("replace", "patch", "hashline", "chunk", "vim", "apply_patch")
-
-
 def _extract_variant_arg() -> str | None:
 	"""Pop `--variant <value>` (or `--variant=<value>`) from sys.argv before argparse in common runs."""
 	argv = sys.argv
@@ -40,15 +36,7 @@ def _resolve_variant() -> str:
 	cli_variant = _extract_variant_arg()
 	variant = cli_variant or os.environ.get("PI_EDIT_VARIANT")
 	if not variant:
-		raise SystemExit(
-			"edit-benchmark: set PI_EDIT_VARIANT=<variant> or pass --variant <variant>.\n"
-			f"Valid variants: {', '.join(VALID_VARIANTS)}"
-		)
-	if variant not in VALID_VARIANTS:
-		raise SystemExit(
-			f"edit-benchmark: unknown variant '{variant}'.\n"
-			f"Valid variants: {', '.join(VALID_VARIANTS)}"
-		)
+		raise SystemExit("edit-benchmark: set PI_EDIT_VARIANT=<variant> or pass --variant <variant>.")
 	return variant
 
 

scripts/run-rs-task.ts

@@ -27,10 +27,8 @@ const TASK_COMMANDS = {
 			"--workspace",
 			"--fix",
 			"--allow-dirty",
-			"--all-targets",
 			"--no-deps",
 			"--allow-staged",
-			"--broken-code",
 			"--allow-no-vcs",
 		],
 	],